Journal: bioRxiv
Article Title: Type I and Type III Interferons Differentially Shape Antiviral Defense and Epithelial Integrity at the Choroid Plexus
doi: 10.64898/2026.02.10.705109
Figure Lengend Snippet: All choroid plexus organoids used were 55±5 days old. (A) Heatmap showing changes in cytokine and chemokine levels in supernatants collected from ChP organoids infected with 200 PFU of E5 at 1, 3, and 5 days post infection, displayed as fold change relative to uninfected controls. (B) Bar plot showing concentrations (log 10 pg/mL) of type III interferons (IFN-λ2/3 and IFN-λ1) and type I interferons (IFN-β and IFN-α2) in supernatants from infected ChP organoids at 1, 3, and 5 days post infection; data are shown as mean ± standard deviation with individual organoids represented as points. (C) Bar plot showing concentrations (log 10 pg/mL) of type III interferons (IFN-λ2/3 and IFN-λ1) and type I interferons (IFN-β) in CSF-like fluid collected from ChP organoids at 2 and 3 days post infection; data are shown as mean ± standard deviation with individual organoids represented as points. (D) Volcano plot showing differential gene expression in ChP organoids at 3 days post infection compared with mock-infected controls. (E) Heatmap showing the top upregulated interferon-stimulated genes (ISGs) in ChP organoids at 3 days post infection. (F) Dot plot from scRNAseq of infected cerebral organoids showing expression of type III IFN receptor subunits ( IFNLR1 and IL10RB ), type I IFN receptor subunits ( IFNAR1 and IFNAR2 ), and selected ISGs ( ISG15 , IFIT2 , and IFITM2 ) across annotated cell clusters; values are scaled such that 1 (red) represents the highest normalized expression and 0 (white) represents the lowest, and dot size indicates the percentage of cells within each cluster expressing the indicated gene. (G–I) ChP organoids were pretreated with 0, 100, or 1,000 ng/mL recombinant human IFN-λ3 prior to infection with 200 PFU of E5. (G) Bar plot showing E5 RNA levels measured by quantitative PCR in ChP organoids following IFN-λ3 pretreatment; data are shown as mean ± standard deviation with individual organoids represented as points. (H) Volcano plot showing differential gene expression in uninfected ChP organoids treated with 1,000 ng/mL IFN-λ3. (I) Heatmap showing the top upregulated ISGs in uninfected ChP organoids treated with 1,000 ng/mL IFN-λ3. For volcano plots, pink circles indicate significantly differentially expressed genes (log₂ fold change > 1; adjusted p value < 0.05). For heatmaps, red indicates higher expression and blue indicates lower expression.
Article Snippet: Choroid plexus organoids (∼55 days in culture) were pretreated overnight with 0, 100, or 1,000 ng/mL recombinant human IFN-λ3 (rhIFN-λ3; R&D Systems, cat. no. 8417-IL-025/CF) diluted in cerebral organoid differentiation medium containing vitamin A.
Techniques: Infection, Standard Deviation, Gene Expression, Expressing, Recombinant, Real-time Polymerase Chain Reaction